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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5802543, gi|7...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPLQTGMV LGVMIGAGVA VLVTAVLILL VVRRLRVQKT PAPEGPRYRF RKRDKVLFYG  60
   61 RKIMRKVSQS TSSLVDTSVS TTSRPRMKKK LKMLNIAKKI LRIQKETPTL QRKEPPPSVL 120
  121 EADLTEGDLA NSHLPSEVLY MLKNVRVLGH FEKPLFLELC RHMVFQRLGQ GDYVFRPGQP 180
  181 DASIYVVQDG LLELCLPGPD GKECVVKKVV PGDSVNSLLS ILDVITGHQH PQRTVSARAA 240
  241 RDSTVLRLPV EAFSAVFTKY PESLVRVVQI IMVRLQRVTF LALHNYLGLT NELFSHEIQP 300
  301 LRLFPSPGLP TRTSPVRGSK RVVSTSGTED TSKETSGRPL DSIGAPLPGP AGDPVKPTSL 360
  361 EAPPAPLLSR CISMPVDISG LQGGPRSDFD MAYERGRISV SLQEEASGGP QTASPRTPTQ 420
  421 ELREQPAGAC EYSYCEDESA TGGCPFGPYQ GRQTSSIFEA AKRELAKLMR IEDPSLLNSR 480
  481 VLLHHAKAGT IIARQGDQDV SLHFVLWGCL HVYQRMIDKA EEVCLFVAQP GELVGQLAVL 540
  541 TGEPLIFTLR AQRDCTFLRI SKSHFYEIMR AQPSVVLSAA HTVAARMSPF VRQMDFAIDW 600
  601 TAVEAGRALY RQGDRSDCTY IVLNGRLRSV IQRGSGKKEL VGEYGRGDLI GVVEALTRQP 660
  661 RATTVHAVRD TELAKLPEGT LGHIKRRYPQ VVTRLIHLLS QKILGNLQQL QGPFPGSGLS 720
  721 VPQHSELTNP ASNLSTVAIL PVCAEVPMMA FTLELQHALQ AIGPTLLLNS DVIRALLGAS 780
  781 ALDSIQEFRL SGWLAQQEDA HRIVLYQTDT SLTPWTVRCL RQADCILIVG LGDQEPTVGQ 840
  841 LEQMLENTAV RALKQLVLLH REEGPGPTRT VEWLNMRSWC SGHLHLRCPR RLFSRRSPAK 900
  901 LHELYEKVFS RRADRHSDFS RLARVLTGNT IALVLGGGGA RGCSHIGVLK ALEEAGVPVD 960
  961 LVGGTSIGSF IGALYAEERS ASRTKQRARE WAKSMTSVLE PVLDLTYPVT SMFTGSAFNR1020
 1021 SIHRVFQDKQ IEDLWLPYFN VTTDITASAM RVHKDGSLWR YVRASMTLSG YLPPLCDPKD1080
 1081 GHLLMDGGYI NNLPADIARS MGAKTVIAID VGSQDETDLS TYGDSLSGWW LLWKRLNPWA1140
 1141 DKVKVPDMAE IQSRLAYVSC VRQLEVVKSS SYCEYLRPSI DCFKTMDFGK FDQIYDVGYQ1200
 1201 YGKAVFGGWT RGEVIEKMLT DRRSTDLNES RRADILAFPS SGFTDLAEIV SRIEPPTSYV1260
 1261 SDGCADGEES DCLTEYEEDA GPDCSRDEGG SPEGASPSTA SEVEEEKSTL RQRRFLPQET1320
 1321 PSSVADA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle