YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPIX_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTWGLLFLL WPATTDTQAC PRPCTCQSLE TMGLKVNCEG QGLTALPVIP AHTRQLLLAN  60
   61 NSLRSVPPGA FDHLPQLWDL DVTHNPWHCD CSLTYLRLWL EDHMPEALMH VYCASPDLAT 120
  121 RRPLGQLTGY ELGSCGWKLP PSWAYPGVWW DVSLVAVAVL GLILLAGLLN TFTESRN

Type	Start	End	Confidence
Signal Peptide	1	19	0.91
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	147	0.94
Transmembrane Helix	148	169	0.89
Cytoplasmic	170	177	0.70