YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XCR1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSTAFYDY HDKLSLLCEN NVIFFSTIST IVLYSLVFLL SLVGNSLVLW VLVKYENLES  60
   61 LTNIFILNLC LSDLMFSCLL PVLISAQWSW FLGDFFCKFF NMIFGISLYS SIFFLTIMTI 120
  121 HRYLSVVSPI STLGIHTLRC RVLVTSCVWA ASILFSIPDA VFHKVISLNC KYSEHHGFLA 180
  181 SVYQHNIFFL LSMGIILFCY VQILRTLFRT RSRQRHRTVR LIFTVVVAYF LSWAPYNLTL 240
  241 FLKTGIIQQS CESLQQLDIA MIICRHLAFS HCCFNPVLYV FVGIKFRRHL KHLFQQVWLC 300
  301 RKTSSTVPCS PGTFTYEGPS FY

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.92
Transmembrane Helix	31	53	0.92
Cytoplasmic	54	63	0.88
Transmembrane Helix	64	85	0.92
Non-Cytoplasmic	86	101	0.76
Transmembrane Helix	102	121	0.91
Cytoplasmic	122	137	0.84
Transmembrane Helix	138	158	0.88
Non-Cytoplasmic	159	184	0.88
Transmembrane Helix	185	204	0.93
Cytoplasmic	205	217	0.84
Transmembrane Helix	218	237	0.90
Non-Cytoplasmic	238	261	0.89
Transmembrane Helix	262	283	0.80
Cytoplasmic	284	322	0.83