YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT4_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPGAWKRL KSLLRKDDTP LFLNDTSAFD FSDEVSDEGL SRFNKLRVVV ADDDSEAPER  60
   61 PVNGAHPALQ ADDDSLLDQD LPLTNSQLSL KMDPCDNCSK RRELLKQRKV KTRLTIAAVL 120
  121 YLLFMIGELV GGYMANSLAI MTDALHMLTD LSAIILTLLA LWLSSKSPTR RFTFGFHRLE 180
  181 VLSAMISVML VYVLMGFLLY EAVQRTIHMN YEINGDVMLI TAAVGVAVNV IMGFLLNQSG 240
  241 HHHSHAHSHS LPSNSPSMVS SGHNHGQDSL AVRAAFVHAL GDLVQSVGVL IAAYIIRFKP 300
  301 EYKIADPICT YIFSLLVAFT TFRIIWDTVV IILEGVPSHL NVDYIKESLM KIEDVYSVED 360
  361 LNIWSLTSGK STAIVHMQLI PGSSSKWEEV QSKAKHLLLN TFGMYKCTIQ LQSYRQEVIR 420
  421 TCANCQSSST

Type	Start	End	Confidence
Cytoplasmic	1	111	0.99
Transmembrane Helix	112	135	0.85
Non-Cytoplasmic	136	143	0.82
Transmembrane Helix	144	164	0.92
Cytoplasmic	165	180	0.80
Transmembrane Helix	181	200	0.92
Non-Cytoplasmic	201	216	0.88
Transmembrane Helix	217	237	0.92
Cytoplasmic	238	274	0.88
Transmembrane Helix	275	296	0.67
Non-Cytoplasmic	297	303	0.55
Transmembrane Helix	304	326	0.72
Cytoplasmic	327	430	0.71