YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCLN_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEEAGEVLE NVLKASCLPL GFIVFLPAVL LLVAPPLPAA DAAHEFTVYR MQQYDLQGQP  60
   61 YGTRNAVLNT EARTVDADVL SRRCVLMRLL DFSYEHYQKA LRQSAGAVVI ILPRAMAAVP 120
  121 QDVVRQFMEI EPEMLAMETV VPVYFAVEDE ALLSIYEQTQ AASASQGSAS AAEVLLHTAT 180
  181 ANGFQMVTSG AQSQAVSDWL ITSVEGRLTG LGGEDLPTIV IVAHYDAFGV APWLSLGADS 240
  241 NGSGISVLLE LARLFSRLYT YKRTHAAYNL LFFASGGGKF NYQGTKRWLE DSLDHTDSSL 300
  301 LQDNVAFVLC LDTVGRGSHL RLHVSKPPRE GTLQHAFLRE LETVAAHQFP DVSFSMVHKK 360
  361 INLADDVLAW EHERFAIRRL PAFTLSHLES HRAGPRSSIM DVRSRVDSKT LTRNTRIIAE 420
  421 ALTRVIYNLT EKGTPPDMPV FTEQMQVQEE QIDSVMDWLT NQPRAAQLLD KDGTFLSTLE 480
  481 HFLSRYLKDV RQHHVKADKR DPEFVFYDQL KQVMNAYRVK PAIFDLLLAL CIGAYLGMAY 540
  541 TAVQHFHVLY KTVQRLLLKA KAQ

Type	Start	End	Confidence
Signal Peptide	1	42	0.77
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	563	0.88