YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119352086
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFWRLICDTF RKIVDSKYFG RGIMTAILVN TLSMGIEYHE QPEELTNALE ISNIVFTSLF  60
   61 ALEMLLKLLV YGPFGYIKNP YNIFDGVIVV ISVWEIVGQQ GGGLSVLRTF RLMRVLKLVR 120
  121 FLPALQRQLV VLMKTMDNVA TFCMLLMLFI FIFSILGMHL FGCKFASERD GDTLPDRKNF 180
  181 DSLLWAIVTV FQILTQEDWN KVLYNGMAST SSWAALYFIA LMTFGNYVLF NLLVAILVEG 240
  241 FQAEGDATKS ESEPDFFSPS VDGDGDRKKR LALVALGEHA ELRKS

Type	Start	End	Confidence
Cytoplasmic	1	17	0.92
Transmembrane Helix	18	38	0.70
Non-Cytoplasmic	39	50	0.61
Transmembrane Helix	51	71	0.75
Cytoplasmic	72	80	0.55
Transmembrane Helix	81	103	0.65
Non-Cytoplasmic	104	138	0.53
Transmembrane Helix	139	162	0.87
Cytoplasmic	163	179	0.52
Transmembrane Helix	180	195	0.46
Non-Cytoplasmic	196	212	0.78
Transmembrane Helix	213	235	0.88
Cytoplasmic	236	285	0.84