YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119352080
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFTQLNDLSG AGGRQGPGST EKDPGSADSE AEGLPYPALA PVVFFYLSQD SRPRSWCLRT  60
   61 VCNPWFERVS MLVILLNCVT LGMFRPCEDI ACDSQRCRIL QAFDDFIFAF FAVEMVVKMV 120
  121 ALGIFGKKCY LGDTWNRLDF FIVIAGMLEY SLDLQNVSFS AVRTVRVLRP LRAINRVPSM 180
  181 RILVTLLLDT LPMLGNVLLL CFFVFFIFGI VGVQLWAGLL RNRCFLPENF SLPLSVDLEP 240
  241 YYQTENEDES PFICSQPREN GMRSCRSVPT LRGEGGGGPP CSLDYETYNS SSNTTCVNWN 300
  301 QYYTNCSAGE HNPFKGAINF DNIGYAWIAI FQVITLEGWV DIMYFVMDAH SFYNFIYFIL 360
  361 LIIVGSFFMI NLCLVVIATQ FSETKQRESQ LMREQRVRFL SNAST

Type	Start	End	Confidence
Cytoplasmic	1	105	0.71
Transmembrane Helix	106	126	0.71
Non-Cytoplasmic	127	193	0.58
Transmembrane Helix	194	217	0.86
Cytoplasmic	218	322	0.91
Transmembrane Helix	323	345	0.83
Non-Cytoplasmic	346	354	0.81
Transmembrane Helix	355	378	0.93
Cytoplasmic	379	405	0.88