YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119352092
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELKSCPYCAS ALEDPEFEFS GSESGDSDAH GVYEFTQDVR HGDCRDPVQQ PHEVGTPGHS  60
   61 NERRRTPLRK ASQPGGIGHL WASFSGKLRR IVDSKYFNRG IMAAILVNTL SMGVEYHEQP 120
  121 EELTNALEIS NIVFTSMFAL EMLLKLLACG PLGYIRNPYN IFDGIVVVIS VWEIVGQADG 180
  181 GLSVLRTFRL LRVLKLVRFL PALRRQLVVL MRTMDNVATF CMLLMLFIFI FSILGMHLFG 240
  241 CKFSLKTDSG DTVPDRKNFD SLLWAIVTVF QILTQEDWNV VLYNGMASTS SWAALYFVAL 300
  301 MTFGNYVLFN LLVAILVEGF QAEGDATRSD TDEDKTS

Type	Start	End	Confidence
Cytoplasmic	1	95	0.95
Transmembrane Helix	96	114	0.64
Non-Cytoplasmic	115	128	0.56
Transmembrane Helix	129	149	0.66
Cytoplasmic	150	215	0.43
Transmembrane Helix	216	240	0.85
Non-Cytoplasmic	241	291	0.60
Transmembrane Helix	292	314	0.87
Cytoplasmic	315	337	0.78