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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYNRG_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRPGAGAS GAAGAGTGPG GAGSFMFPVA GGMRPPQGLI PMQQQGFPMV SVMQPNMQGM  60
   61 MGMNYSSQMS QGPIAMQAGI PMGPMPAAGV PFLGQPPFLG MRPAAPQYTP DMQKQFAEEQ 120
  121 QKRFEQQQKL LEEERKRRQF EEQKQKLRLL SSVKPKTGEK NRDDALEAIK GNLDGFSRDA 180
  181 KMHPTPASHP KKPDCPTSSH STKTVSPSSA FLGEDEFSGF MQGPVELPTC GPSSTAQPFQ 240
  241 SFLPSTPLGQ LHTQKAGAQP LPPGQAPVSF AVHGVHGQIP CLSAASASHS MQKAGPSLEE 300
  301 KLLVSCDISA SGQEHIKLSS PEAGHRAVVP GSSKNSPGLM AHNGGAVDGC VSGPTTAVAE 360
  361 KTSDQNLSKE ESGVGVFPSQ DPVQPRMPPW IYNESLVPDA YKKILETTMT PTGIDTAKLY 420
  421 PILMSSGLPR ETLGQIWALA NRTTPGKLTK EELYTVLAMV AVTQRGVPAM SPDTLNQFPA 480
  481 APIPTLSGFP MTLPTPVSQP TAMTSGPAGS IPLSLGQPIM GINLVGPVGG AAAPTSSGFM 540
  541 PAYPSNQVGK TEEDDFQDFQ DASKSGSIDD SFTDFQEVPA SSKTSNSQHG NSAPSLLIPL 600
  601 PGTKASTDKY AVFKGISAEK PSENPASFGE SGDKYSAFRE LEPTADSKPL GESFAEFRST 660
  661 GTDDGFTDFK TADSVSPLEP PTKDSFPSAF ASGAAQQTQT QVKTPLNLAD LDMFSSVDCS 720
  721 GEKPVPFSAA FSTSKSVSSR PQPAGSAAAP ASLASTKASS LADDFGEFNL FGEYSNPASV 780
  781 GEQDDFADFM AFGNSSIPSE PKADDKYEAL REEGSPGALS TSTVEGAHNP PVSSSKYDVF 840
  841 KQLSLEGAGL AIEEFKENTP STKSDGDFAD FHSSKFSSTS SDKSLGEKAV AFRHAKEDSA 900
  901 SVKSLDLPSI GGSSVGKEDS EDALSVQFDM KLADVGGDLK HVMSDSSLDL PTVSGQHPPA 960
  961 AGSALASEDA LPETPFPAFA SFKDMMPQTT EQKEYESGDF QDFTRQDMPM VDRSQENTCP1020
 1021 SPASSVASHE TPKEGADDFG EFQSEKPKIS KFDFLVANSQ SKMKSSEEMI KSELATFDLS1080
 1081 VQGSHKRSLS LGDKEISRSS PSPALEQPFR DRSNTLSERA ALPVIRDKYK DLTGEVEENE1140
 1141 RYAYEWQRCL GSALDVIKKA NDTLNGISSS AVCTEVIQSA QGMEYLLGVV EVYRVTKRVE1200
 1201 LGIKATAVCS EKLQQLLKDI DKVWNNLIGF MSLTTLTPDE NSLDFSSCML RPGIKNAQEL1260
 1261 ACGVCLLNVD SRSRKEETPA EEQPKKAFNS ETDSFKLAYG GHQYHASCAN FWINCVEPKP1320
 1321 PGLLLPDLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle