YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FITM1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERGPTVGAG LGAGTRVRAL LGCLVKVLLW VASALLYFGS EQAARLLGSP CLRRLYHAWL  60
   61 AAVVIFGPLL QFHVNSRTIF ASHGNFFNIK FVNSAWGWTC TFLGGFVLLV VFLATRRVAV 120
  121 TARHLSRLVV GAAVWRGAGR AFLLIEDLTG SCFEPLPQGL LLHELPDRKS CLAAGHQWRG 180
  181 YTVSSHTFLL TFCCLLMAEE AAVFAKYLAH GLPAGAPLRL VFLLNVLLLG LWNFLLLCTV 240
  241 IYFHQYTHKV VGAAVGTFAW YLTYGSWYHQ PWSPGIPGHG LFPRSRSMRK HN

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.87
Transmembrane Helix	17	39	0.85
Cytoplasmic	40	54	0.92
Transmembrane Helix	55	74	0.95
Non-Cytoplasmic	75	94	0.90
Transmembrane Helix	95	115	0.96
Cytoplasmic	116	184	0.61
Transmembrane Helix	185	208	0.79
Non-Cytoplasmic	209	217	0.47
Transmembrane Helix	218	243	0.83
Cytoplasmic	244	249	0.39
Transmembrane Helix	250	268	0.77
Non-Cytoplasmic	269	292	0.52