YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BKRB2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCSWKLLGF LSVHEPMPTA ASFGIEMFNV TTQVLGSALN GTLSKDNCPD TEWWSWLNAI  60
   61 QAPFLWVLFL LAALENLFVL SVFFLHKNSC TVAEIYLGNL AAADLILACG LPFWAITIAN 120
  121 NFDWVFGEVL CRVVNTMIYM NLYSSICFLM LVSIDRYLAL VKTMSMGRMR GVRWAKLYSL 180
  181 VIWGCTLLLS SPMLVFRTMR EYSEEGHNVT ACVIVYPSRS WEVFTNVLLN LVGFLLPLSV 240
  241 ITFCTVRILQ VLRNNEMKKF KEVQTERKAT VLVLAVLGLF VLCWVPFQIS TFLDTLLRLG 300
  301 VLSGCWDEHA VDVITQISSY VAYSNSGLNP LVYVIVGKRF RKKSREVYRV LCQKGGCMGE 360
  361 PVQMENSMGT LRTSISVERQ IHKLQDWAGK KQ

Type	Start	End	Confidence
Cytoplasmic	1	9	0.57
Transmembrane Helix	10	28	0.49
Non-Cytoplasmic	29	61	0.87
Transmembrane Helix	62	85	0.92
Cytoplasmic	86	94	0.93
Transmembrane Helix	95	118	0.91
Non-Cytoplasmic	119	136	0.93
Transmembrane Helix	137	159	0.87
Cytoplasmic	160	173	0.95
Transmembrane Helix	174	196	0.87
Non-Cytoplasmic	197	226	0.95
Transmembrane Helix	227	249	0.92
Cytoplasmic	250	268	0.94
Transmembrane Helix	269	290	0.92
Non-Cytoplasmic	291	318	0.90
Transmembrane Helix	319	337	0.58
Cytoplasmic	338	392	0.62