YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DOPP1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADGQCSLP ASWRPVTLTH VEYPAGDLSG HLLAYLSLSP IFVVVGFLTL IIFKRELHTI  60
   61 SFLGGLALNQ GVNWLIKHVI QEPRPCGGPH TAVGTKYGMP SSHSQFMWFF SVYSFLFLYL 120
  121 RMHQTNNARF LDLLWRHVLS LGLLTAAFLV SYSRVYLLYH TWSQVFYGGV AGSLMAVAWF 180
  181 IITQEILTPL FPRIAAWPIS EFFLIRDTSL IPNVLWFEYT VTRAEARNRQ RKLGTKLQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.75
Transmembrane Helix	31	53	0.91
Cytoplasmic	54	59	0.66
Transmembrane Helix	60	80	0.57
Non-Cytoplasmic	81	103	0.77
Transmembrane Helix	104	123	0.88
Cytoplasmic	124	132	0.80
Transmembrane Helix	133	156	0.86
Non-Cytoplasmic	157	163	0.67
Transmembrane Helix	164	183	0.91
Cytoplasmic	184	238	0.75