YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNK2_MOUSE, CIW...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPDLLDPK SAAQNSKPRL SFSSKPTVLA SRVESDSAIN VMKWKTVSTI FLVVVLYLII  60
   61 GAAVFKALEQ PQEISQRTTI VIQKQTFIAQ HACVNSTELD ELIQQIVAAI NAGIIPLGNS 120
  121 SNQVSHWDLG SSFFFAGTVI TTIGFGNISP RTEGGKIFCI IYALLGIPLF GFLLAGVGDQ 180
  181 LGTIFGKGIA KVEDTFIKWN VSQTKIRIIS TIIFILFGCV LFVALPAVIF KHIEGWSALD 240
  241 AIYFVVITLT TIGFGDYVAG GSDIEYLDFY KPVVWFWILV GLAYFAAVLS MIGDWLRVIS 300
  301 KKTKEEVGEF RAHAAEWTAN VTAEFKETRR RLSVEIYDKF QRATSVKRKL SAELAGNHNQ 360
  361 ELTPCRRTLS VNHLTSEREV LPPLLKAESI YLNGLTPHCA GEDIAVIENM K

Type	Start	End	Confidence
Cytoplasmic	1	46	0.95
Transmembrane Helix	47	65	0.94
Non-Cytoplasmic	66	126	0.95
Transmembrane Helix	127	148	0.89
Cytoplasmic	149	156	0.86
Transmembrane Helix	157	178	0.91
Non-Cytoplasmic	179	207	0.95
Transmembrane Helix	208	230	0.92
Cytoplasmic	231	238	0.83
Transmembrane Helix	239	259	0.90
Non-Cytoplasmic	260	272	0.92
Transmembrane Helix	273	295	0.91
Cytoplasmic	296	411	0.99