YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCR5_MOUSE, CKR5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFQGSVPTY IYDIDYGMSA PCQKINVKQI AAQLLPPLYS LVFIFGFVGN MMVFLILISC  60
   61 KKLKSVTDIY LLNLAISDLL FLLTLPFWAH YAANEWIFGN IMCKVFTGVY HIGYFGGIFF 120
  121 IILLTIDRYL AIVHAVFALK VRTVNFGVIT SVVTWVVAVF ASLPEIIFTR SQKEGFHYTC 180
  181 SPHFPHTQYH FWKSFQTLKM VILSLILPLL VMIICYSGIL HTLFRCRNEK KRHRAVRLIF 240
  241 AIMIVYFLFW TPYNIVLLLT TFQEFFGLNN CSSSNRLDQA MQATETLGMT HCCLNPVIYA 300
  301 FVGEKFRSYL SVFFRKHIVK RFCKRCSIFQ QDNPDRVSSV YTRSTGEHEV STGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.96
Transmembrane Helix	39	60	0.91
Cytoplasmic	61	68	0.94
Transmembrane Helix	69	90	0.94
Non-Cytoplasmic	91	109	0.86
Transmembrane Helix	110	131	0.87
Cytoplasmic	132	142	0.84
Transmembrane Helix	143	163	0.90
Non-Cytoplasmic	164	199	0.91
Transmembrane Helix	200	224	0.87
Cytoplasmic	225	235	0.93
Transmembrane Helix	236	257	0.90
Non-Cytoplasmic	258	354	0.82