YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CKR4_MOUSE, CCR4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATEVTDTT QDETVYNSYY FYESMPKPCT KEGIKAFGEV FLPPLYSLVF LLGLFGNSVV  60
   61 VLVLFKYKRL KSMTDVYLLN LAISDLLFVL SLPFWGYYAA DQWVFGLGLC KIVSWMYLVG 120
  121 FYSGIFFIML MSIDRYLAIV HAVFSLKART LTYGVITSLI TWSVAVFASL PGLLFSTCYT 180
  181 EHNHTYCKTQ YSVNSTTWKV LSSLEINVLG LLIPLGIMLF WYSMIIRTLQ HCKNEKKNRA 240
  241 VRMIFGVVVL FLGFWTPYNV VLFLETLVEL EVLQDCTLER YLDYAIQATE TLGFIHCCLN 300
  301 PVIYFFLGEK FRKYITQLFR TCRGPLVLCK HCDFLQVYSA DMSSSSYTQS TVDHDFRDAL 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.98
Transmembrane Helix	45	65	0.94
Cytoplasmic	66	75	0.88
Transmembrane Helix	76	97	0.94
Non-Cytoplasmic	98	112	0.84
Transmembrane Helix	113	133	0.86
Cytoplasmic	134	150	0.80
Transmembrane Helix	151	174	0.87
Non-Cytoplasmic	175	203	0.94
Transmembrane Helix	204	225	0.88
Cytoplasmic	226	239	0.90
Transmembrane Helix	240	261	0.87
Non-Cytoplasmic	262	291	0.88
Transmembrane Helix	292	308	0.65
Cytoplasmic	309	360	0.66