YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCR3_MOUSE, CKR3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNTDEIKT VVESFETTPY EYEWAPPCEK VRIKELGSWL LPPLYSLVFI IGLLGNMMVV  60
   61 LILIKYRKLQ IMTNIYLFNL AISDLLFLFT VPFWIHYVLW NEWGFGHYMC KMLSGFYYLA 120
  121 LYSEIFFIIL LTIDRYLAIV HAVFALRART VTFATITSII TWGLAGLAAL PEFIFHESQD 180
  181 SFGEFSCSPR YPEGEEDSWK RFHALRMNIF GLALPLLVMV ICYSGIIKTL LRCPNKKKHK 240
  241 AIRLIFVVMI VFFIFWTPYN LVLLFSAFHR TFLETSCEQS KHLDLAMQVT EVIAYTHCCV 300
  301 NPVIYAFVGE RFRKHLRLFF HRNVAVYLGK YIPFLPGEKM ERTSSVSPST GEQEISVVF

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.98
Transmembrane Helix	44	64	0.94
Cytoplasmic	65	74	0.86
Transmembrane Helix	75	97	0.93
Non-Cytoplasmic	98	115	0.89
Transmembrane Helix	116	138	0.85
Cytoplasmic	139	150	0.81
Transmembrane Helix	151	170	0.92
Non-Cytoplasmic	171	208	0.90
Transmembrane Helix	209	231	0.87
Cytoplasmic	232	240	0.95
Transmembrane Helix	241	263	0.87
Non-Cytoplasmic	264	292	0.91
Transmembrane Helix	293	309	0.63
Cytoplasmic	310	359	0.61