YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCR1_MOUSE, CKR1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISDFTEAY PTTTEFDYGD STPCQKTAVR AFGAGLLPPL YSLVFIIGVV GNVLMILVLM  60
   61 QHRRLQSMTS IYLFNLAVSD LVFLFTLPFW IDYKLKDDWI FGDAMCKLLS GFYYLGLYSE 120
  121 IFFIILLTID RYLAIVHAVF ALRARTVTLG IITSIITWAL AILASMPALY FFKAQWEFTH 180
  181 RTCSPHFPYK SLKQWKRFQA LKLNLLGLIL PLLVMIICYA GIIRILLRRP SEKKVKAVRL 240
  241 IFAITLLFFL LWTPYNLSVF VSAFQDVLFT NQCEQSKHLD LAMQVTEVIA YTHCCVNPII 300
  301 YVFVGERFWK YLRQLFQRHV AIPLAKWLPF LSVDQLERTS SISPSTGEHE LSAGF

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.96
Transmembrane Helix	40	60	0.94
Cytoplasmic	61	70	0.86
Transmembrane Helix	71	91	0.96
Non-Cytoplasmic	92	111	0.91
Transmembrane Helix	112	134	0.82
Cytoplasmic	135	146	0.80
Transmembrane Helix	147	170	0.88
Non-Cytoplasmic	171	204	0.96
Transmembrane Helix	205	227	0.90
Cytoplasmic	228	236	0.92
Transmembrane Helix	237	255	0.93
Non-Cytoplasmic	256	288	0.90
Transmembrane Helix	289	309	0.69
Cytoplasmic	310	355	0.72