YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GHSR_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNATPSEEP EPNVTLDLDW DASPGNDSLS DELLPLFPAP LLAGVTATCV ALFVVGISGN  60
   61 LLTMLVVSRF RELRTTTNLY LSSMAFSDLL IFLCMPLDLV RLWQYRPWNF GDLLCKLFQF 120
  121 VSESCTYATV LTITALSVER YFAICFPLRA KVVVTKGRVK LVILVIWAVA FCSAGPIFVL 180
  181 VGVEHENGTD PRDTNECRAT EFAVRSGLLT VMVWVSSVFF FLPVFCLTVL YSLIGRKLWR 240
  241 RRGDAAVGSS LRDQNHKQTV KMLAVVVFAF ILCWLPFHVG RYLFSKSFEP GSLEIAQISQ 300
  301 YCNLVSFVLF YLSAAINPIL YNIMSKKYRV AVFKLLGFES FSQRKLSTLK DESSRAWTKS 360
  361 SINT

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.93
Transmembrane Helix	41	64	0.88
Cytoplasmic	65	78	0.79
Transmembrane Helix	79	100	0.90
Non-Cytoplasmic	101	123	0.81
Transmembrane Helix	124	144	0.81
Cytoplasmic	145	160	0.84
Transmembrane Helix	161	181	0.94
Non-Cytoplasmic	182	211	0.94
Transmembrane Helix	212	234	0.91
Cytoplasmic	235	258	0.95
Transmembrane Helix	259	280	0.90
Non-Cytoplasmic	281	300	0.88
Transmembrane Helix	301	321	0.87
Cytoplasmic	322	364	0.93