YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSF2R_MOUSE, GMC...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSHAMNIT PLAQLALLFS TLLLPGTQAL LAPTTPDAGS ALNLTFDPWT RTLTWACDTA  60
   61 AGNVTVTSCT VTSREAGIHR RVSPFGCRCW FRRMMALHHG VTLDVNGTVG GAAAHWRLSF 120
  121 VNESAAGSGA ENLTCEIRAA RFLSCAWREG PAAPADVRYS LRVLNSTGHD VARCMADPGD 180
  181 DVITQCIAND LSLLGSEAYL VVTGRSGAGP VRFLDDVVAT KALERLGPPR DVTASCNSSH 240
  241 CTVSWAPPST WASLTARDFQ FEVQWQSAEP GSTPRKVLVV EETRLAFPSP APHGGHKVKV 300
  301 RAGDTRMKHW GEWSPAHPLE AEDTRVPGAL LYAVTACAVL LCALALGVTC RRFEVTRRLF 360
  361 PPIPGIRDKV SDDVRVNPET LRKDLLQP

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	327	0.99
Transmembrane Helix	328	350	0.88
Cytoplasmic	351	388	0.93