YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TAAR1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLCHAITNI SHRNSDWSRE VQASLYSLMS LIILATLVGN LIVIISISHF KQLHTPTNWL  60
   61 LHSMAIVDFL LGCLIMPCSM VRTVERCWYF GEILCKVHTS TDIMLSSASI FHLAFISIDR 120
  121 YCAVCDPLRY KAKINISTIL VMILVSWSLP AVYAFGMIFL ELNLKGVEEL YRSQVSDLGG 180
  181 CSPFFSKVSG VLAFMTSFYI PGSVMLFVYY RIYFIAKGQA RSINRTNVQV GLEGKSQAPQ 240
  241 SKETKAAKTL GIMVGVFLVC WCPFFLCTVL DPFLGYVIPP SLNDALYWFG YLNSALNPMV 300
  301 YAFFYPWFRR ALKMVLLGKI FQKDSSRSKL FL

Type	Start	End	Confidence
Cytoplasmic	1	24	0.81
Transmembrane Helix	25	47	0.90
Non-Cytoplasmic	48	58	0.73
Transmembrane Helix	59	81	0.87
Cytoplasmic	82	135	0.86
Transmembrane Helix	136	157	0.90
Non-Cytoplasmic	158	191	0.91
Transmembrane Helix	192	213	0.92
Cytoplasmic	214	249	0.95
Transmembrane Helix	250	270	0.91
Non-Cytoplasmic	271	286	0.80
Transmembrane Helix	287	308	0.91
Cytoplasmic	309	332	0.98