YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CC50A_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMNYSAKDE VDGGPAGPPG GAAKTRRPDN TAFKQQRLPA WQPILTAGTV LPTFFIIGLI  60
   61 FIPIGIGIFV TSNNIREIEI DYTGTEPSSP CNKCLSPNVT SCACTINFTL KQSFEGNVFM 120
  121 YYGLSNFYQN HRRYVKSRDD SQLNGDPSAL LNPSKECEPY RRNEDRPIAP CGAIANSMFN 180
  181 DTLELYLVAN ESDPKPIPIP LKKKGIAWWT DKNVKFRNPP GKESLEEKFK DTIKPVNWHK 240
  241 AVYELDPEDE SNNGFINEDF IVWMRTAALP TFRKLYRLIE RRDDLHPTLP AGQYFLNITY 300
  301 NYPVHSFDGR KRMILSTISW MGGKNPFLGI AYITIGSISF LLGVVLLVIN HKYRNSSNTA 360
  361 DITI

Type	Start	End	Confidence
Cytoplasmic	1	43	0.67
Transmembrane Helix	44	70	0.83
Non-Cytoplasmic	71	327	0.68
Transmembrane Helix	328	349	0.93
Cytoplasmic	350	364	0.66