YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123238430, gi...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLYSSSSK QFSSSRSGGG GGGGSVRVSS TRGSLGGGYS SGGFSGGSFS RGSSGGGCFG  60
   61 GSSGGYGGFG GGGSFGGGYG GSSFGGGYGG SSFGGGSFGG GGSFGGGSFG GGSYGGGFGG 120
  121 GGFGGDGGSL LSGNEKVTMQ NLNDRLASYM DKVRALEESN YELEGKIKEW YEKHGNSSQR 180
  181 EPRDYSKYYK TIEDLKGQIL TLTTDNANVL LQIDNARLAA DDFRLKYENE VTLRQSVEAD 240
  241 INGLRRVLDE LTLSKSDLEM QIESLNEELA YLKKNHEEEM RDLQNVSTGD VNVEMNAAPG 300
  301 VDLTQLLNNM RNQYEQLAEK NRKDAEEWFN QKSKELTTEI DSNIEQMSSH KSEITELRRT 360
  361 VQGLEIELQS QLALKQSLEA SLAETEGRYC VQLSQIQSQI SALEEQLQQI RAETECQNAE 420
  421 YQQLLDIKTR LENEIQTYRS LLEGEGSSSG GGGGRGGGSH GGSYGGSSGG GSYGGSSGGG 480
  481 GSYGGSSGGG GSYGGGSSGG GSHGGSSGGG YGGGSSSGGA GGHGGSSGGG YGGGSSSGGQ 540
  541 GGSGGFKSSG GGDQSSKGPR Y

Type	Start	End	Confidence
Cytoplasmic	1	54	0.69
Transmembrane Helix	55	79	0.62
Non-Cytoplasmic	80	92	0.51
Transmembrane Helix	93	107	0.56
Cytoplasmic	108	108	0.18
Transmembrane Helix	109	125	0.63
Non-Cytoplasmic	126	561	0.51