YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR105_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAAEGILL SIATVEAGLG VLGNTFIALV NCMDWAKNNK LSMTGFLLIG LATSRIFIVW  60
   61 LLTLDAYAKL FYPSKYFSSS LIEIISYIWM TVNHLTVWFA TSLSIFYFLK IANFSDCVFL 120
  121 WLKRRTDKAF VFLLGCLLTS WVISFSFVVK VMKDGKVNHR NRTSEMYWEK RQFTINYVFL 180
  181 NIGVISLFMM TLTACFLLIM SLWRHSRQMQ SGVSGFRDLN TEAHVKAIKF LISFIILFVL 240
  241 YFIGVSIEII CIFIPENKLL FIFGFTTASI YPCCHSFILI LSNSQLKQAF VKVLQGLKFF 300
  301

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.76
Transmembrane Helix	8	30	0.85
Cytoplasmic	31	42	0.69
Transmembrane Helix	43	64	0.91
Non-Cytoplasmic	65	86	0.78
Transmembrane Helix	87	109	0.82
Cytoplasmic	110	128	0.78
Transmembrane Helix	129	149	0.94
Non-Cytoplasmic	150	177	0.91
Transmembrane Helix	178	202	0.87
Cytoplasmic	203	229	0.90
Transmembrane Helix	230	252	0.90
Non-Cytoplasmic	253	259	0.78
Transmembrane Helix	260	281	0.92
Cytoplasmic	282	300	0.90