YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUT2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAQVPFSF PLAHFLIFVF VTSTIIHLQQ RIVKLQTLSE KELQAVQMSS PNAARTDMQQ  60
   61 SAKLQGIFTI NSIGRLGNQM GEYATLFALA RMNGRLAFIP ESMHNALAPI FRISLPVLHS 120
  121 DTARRIPWQN YHLNDWMEER YRHIPGQYVR FTGYPCSWTF YHHLRPEILK EFTLHDHVRE 180
  181 EAQAFLRGLR VNGSQPSTFV GVHVRRGDYV HVMPKVWKGV VADRGYLEKA LDRFRARYSS 240
  241 PVFVVTSNGM AWCRENINTS LGDVVFAGNG IEGSPAKDFA LLTQCNHTIM TIGTFGIWAA 300
  301 YLAGGDTIYL ANYTLPDSPF LKIFKPAAAF LPEWMGIPAD LSPLLKH

Type	Start	End	Confidence
Cytoplasmic	1	7	0.57
Transmembrane Helix	8	28	0.81
Non-Cytoplasmic	29	347	0.72