YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAR2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQCYYNETI GFFYNNSGKE LSLHWRPKDV VVVALGLTVS VLVLLTNLLV IAAIASNRRF  60
   61 HQPIYYLLGN LAAADLFAGM AYLFLMFHTG PPHCQALHQR LVPATGPAGH QPHGVSGHTA 120
  121 GIAVERHRSV MAVQLHSRLP RGRVVTLIVG VWAAALGLGL LPAHFWHCLC DLDSCSRMVP 180
  181 LFSRSYLAAW ALSSLLVFLL MVAVYTRIFF YVRRRVERMA EHVSCHPRYR ETTLSLVKTV 240
  241 VIILGAFVVC WTPGQVVLLL DGLDCKTCNV LAVEKYFLLL AEANSLVNAV VYSCRDAEMR 300
  301 RTFRRLLCCM CLRWSSHKSA RYSASAQTGA STRIMLPENG RPLMDSTL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.83
Transmembrane Helix	31	55	0.92
Non-Cytoplasmic	56	63	0.78
Transmembrane Helix	64	87	0.85
Cytoplasmic	88	143	0.86
Transmembrane Helix	144	166	0.90
Non-Cytoplasmic	167	186	0.95
Transmembrane Helix	187	209	0.95
Cytoplasmic	210	233	0.92
Transmembrane Helix	234	254	0.79
Non-Cytoplasmic	255	276	0.77
Transmembrane Helix	277	295	0.40
Cytoplasmic	296	348	0.54