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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SEM5A_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGACILAWL FSSLGVWRLA RPETQDPAKC QRAEHPVVSY KEIGPWLREF RAENAVDFSR  60
   61 LTFDPGQKEL VVGARNYLFR LELEDLSLIQ AVEWECDEAT KKACYSKGKS KEECQNYIRV 120
  121 LLVGGDRLFT CGTNAFTPVC TIRSLSNLTE IHDQISGMAR CPYSPQHNST ALLTASGELY 180
  181 AATAMDFPGR DPAIYRSLGT LPPLRTAQYN SKWLNEPNFV SSYDIGNFTY FFFRENAVEH 240
  241 DCGKTVFSRP ARVCKNDIGG RFLLEDTWTT FMKARLNCSR PGEVPFYYNE LQGTFFLPEL 300
  301 DLIYGIFTTN VNSIASSAVC VFNLSAISQA FNGPFKYQEN SRSAWLPYPN PNPNFQCGTM 360
  361 DQGLYVNLTE RNLQDAQKFI LMHEVVQPVT TVPSFMEDNS RFSHLAVDVV QGRETLVHII 420
  421 YLGTDYGTIK KVRAPLSQSS GSCLLEEIEL FPERRSEPIR SLQILHSQSV LFVGLQEHVA 480
  481 KIPLKRCHFH QTRSACIGAQ DPYCGWDAVM KKCTSLEESL SMTQWDQSIP TCPTRNLTVD 540
  541 GSFGPWSPWT PCTHTDGTAV GSCLCRSRSC DRPAPQCGGW QCEGPRMEIT NCSRNGGWTP 600
  601 WTSWSPCSTT CGIGFQVRQR SCSNPTPRHG GRVCVGQNRE ERYCNEHLLC PPHVFWTGWG 660
  661 PWERCTAQCG GGIQARRRTC ENGPDCAGSN VEYHPCNTNA CPELKKTTPW TPWTPVNISD 720
  721 NGGHYEQRFR YTCKARLPDP NLLEVGRQRI EMRYCSSDGT SGCSTDGLSG DFLRAGRYSA 780
  781 HTVNGAWSAW TSWSQCSRDC SRGIRNRKRV CNNPEPKFGG MPCLGPSLEF QECNILPCPV 840
  841 DGVWSCWSSW SKCSATCGGG HYMRTRSCSN PAPAYGGDIC LGLHTEEALC NTQTCPESWS 900
  901 EWSDWSVCDA SGTQVRARQC ILLFPVGSQC SGNTTESRPC VFDSNFIPEV SVARSSSVEE 960
  961 KRCGEFNMFH MFHMMAVGLS SSILGCLLTL LVYTYCQRYQ QQSHDATVIH PVSPAALNSS1020
 1021 ITNHINKLDK YDSVEAIKAF NKNNLILEER NKYFNPHLTG KTYSNAYFTD LNNYDEY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle