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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYCP1_MOUSE, SCP...
Protein type: Globular with Signal Peptide
Type Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKQKPFTLF VPPRLSSSQV SAVKPQTAGG DSNYFKTVNK CTEGDFGVPF TMSSRENIDK  60
   61 DPAFQKLSIL PMLEQVANSG SCHYQEGVND SDFENSEPMS RLYSKLYKEA EKIKKWKVSI 120
  121 ESELKQKENK LQENRKIIEA QRKAIQELQF ENEKVSLKLE EEIQENKDLI KENNATIHWC 180
  181 NLLKETCARS AEKTNKYEYE REETRQVYVD LNSNIEKMIL AFEELRVQAE NARLEMHFKL 240
  241 KEDHEKIQHL EEEYQKEVNN KENQVSELLI QSAEKENKMK DLTFLLEESR DKANQLEEKT 300
  301 KLQDENLKEL SEKKDHLTSE LEDIKMSMQR SMSTQKALEE DLQIATKTIS QLTEVKEAQM 360
  361 EELNKAKTTH SFVVTELKAT TCTLEELLRT EQQRLEKNED QLKLITVELQ KKSNELEEMT 420
  421 KFKNNKEVEL EELKNILAED QKLLDEKKQV EKLAEELQEK EQELTFLLET REKEVHDLQE 480
  481 QVTVTKTSEQ HYLKQVEEMK TELEKEKLKN TELTASCDML LLENKKFVQE ASDMALELKK 540
  541 HQEDIINCKK QEERLLKQIE NLEEKEMHLR DELESVRKEF IQQGDEVKCK LDKSEENARS 600
  601 IECEVLKKEK QMKILESKCN NLKKQVENKS KNIEELHQEN KTLKKKSSAE IKQLNAYEIK 660
  661 VSKLELELES TKQRFEEMTN NYQKEIENKK ISEGKLLGEV EKAKATVDEA VKLQKEIDLR 720
  721 CQHKIAEMVA LMEKHKHQYD KIVEERDSEL GLYKNREQEQ SSAKIALETE LSNIRNELVS 780
  781 LKKQLEIEKE EKEKLKMAKE NTAILKDKKD KKIQASLLES PEATSWKFDS KTTPSQNISR 840
  841 LSSSMDSGKS KDNRDNLRAS AKSILPTTVT KEYTVKTPTK KSIYQRENKY IPTGGSNKKR 900
  901 KTAFEFDVNS DSSETADLLS LVSEEDVSNR LYDNNPPDSH LLVKTPKQTP LSLSTPASFM 960
  961 KFGSLKKMRE DRWTTIAKID RKRRLKEAEK LFS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle