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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYMC_MOUSE
Protein type: Globular with Signal Peptide
Type Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFVSEGSP GSLPVLAAAA RARGRAELLI STVGPEECVV PFLTRPKVPV LQLDSGNYLF  60
   61 SASAICRYFF LLCGWEQDDL TNQWLEWEAT ELQPVLSAAL HCLVVQGKKG EDILGPLRRV 120
  121 LTHIDHSLSR QNCPFLAGDT ESLADIVLWG ALYPLLQDPA YLPEELGALQ SWFQTLSTQE 180
  181 PCQRAAETVL KQQGVLALRL YLQKQPQPQP PPPEGRTVSN ELEEEELATL SEEDIVTAVA 240
  241 AWEKGLESLP PLKLQQHPVL PVPGERNVLI TSALPYVNNV PHLGNIIGCV LSADVFARYC 300
  301 RLRQWNTLYL CGTDEYGTAT ETKAMEEGLT PREICDKYHA IHADIYRWFG ISFDTFGRTT 360
  361 TPQQTKITQD IFQRLLTRGF VLRDTVEQLR CERCARFLAD RFVEGVCPFC GYEEARGDQC 420
  421 DRCGKLINAI ELKKPQCKIC RSCPVVRSSQ HLFLDLPKLE KRLEDWLGKT VPGSDWTPNA 480
  481 RFIIRSWLRD GLKPRCITRD LKWGTPVPLE GFEDKVFYVW FDATIGYVSI TANYTDQWEK 540
  541 WWKNPEQVDL YQFMAKDNVP FHGLVFPCSV LGAEDNYTLV KHIIATEYLN YEDGKFSKSR 600
  601 GIGVFGDMAK DTGIPADIWR FYLLYIRPEG QDSAFSWTDL LIKNNSELLN NLGNFINRAG 660
  661 MFVSKFFGGC VPEMALTPDD RRLVAHVSWE LQHYHQLLEK VRIRDALRSI LTISRHGNQY 720
  721 IQVNEPWKRI KGGEMDRQRA GTVTGMAVNM AALLSVMLQP YMPTVSSTIQ TQLQLPPAAC 780
  781 RILATSFICT LPAGHRIGTV SPLFQKLEND QIENLRQRFG GGQAKGSPKP AAVEAVTAAG 840
  841 SQHIQTLTDE VTKQGNVVRE LKAQKADKNQ VAAEVAKLLD LKKQLALAEG KPIETPKGKK 900
  901 KK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle