YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPM6A_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENMEEGQT QKGCFECCIK CLGGIPYASL IATILLYAGV ALFCGCGHEA LSGTVNILQT  60
   61 YFELARTAGD TLDVFTMIDI FKYVIYGIAA AFFVYGILLM VEGFFTTGAI KDLYGDFKIT 120
  121 TCGRCVSAWF IMLTYLFMLA WLGVTAFTSL PVYMYFNVWT ICRNTTLVEG ANLCLDLRQF 180
  181 GIVTIGEEKK ICTASENFLR MCESTELNMT FHLFIVALAG AGAAVIAMVH YLMVLSANWA 240
  241 YVKDACRMQK YEDIKSKEEQ ELHDIHSTRS KERLNAYT

Type	Start	End	Confidence
Cytoplasmic	1	28	0.85
Transmembrane Helix	29	51	0.78
Non-Cytoplasmic	52	83	0.93
Transmembrane Helix	84	106	0.91
Cytoplasmic	107	125	0.85
Transmembrane Helix	126	149	0.88
Non-Cytoplasmic	150	210	0.92
Transmembrane Helix	211	234	0.87
Cytoplasmic	235	278	0.91