YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85719324, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPWTLWRCC QRVVGWVPVL FITFVVVWSY YAYVVELCVS TISRTGEKGK TVVYLVAFHL  60
   61 FFVMFVWSYW MTIFTSPASP SKEFYLSNSE KERYEKEFSQ ERQQDILRRA ARDLPIYTTS 120
  121 ASKAIRYCEK CQLIKPDRAH HCSACDRCVL KMDHHCPWVN NCVGFTNYKF FMLFLLYSLL 180
  181 YCLFVAATVL EYFIKFWTNE PTVLNFPSAK FHVLFLFFVS AMFFVSVLSL FSYHCWLVGK 240
  241 NRTTIESFRA PMFSYGIDGN GFSLGCSKNW RQVFGDEKKY WLVPIFSSLG DGCSFPARLV 300
  301 GMDPEQASVA NQSDYVRSIG SNQPFPIKPL SESKNRLLDS ESQWLENGAE EGVTKSGTNN 360
  361 HVTVEIEN

Type	Start	End	Confidence
Cytoplasmic	1	12	0.89
Transmembrane Helix	13	34	0.92
Non-Cytoplasmic	35	51	0.90
Transmembrane Helix	52	73	0.90
Cytoplasmic	74	172	0.93
Transmembrane Helix	173	194	0.91
Non-Cytoplasmic	195	212	0.87
Transmembrane Helix	213	236	0.90
Cytoplasmic	237	368	0.91