YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCO2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLALGPKAW PKLSQFKPLL RISGGETLHR NSRHWAGQGQ RQGPGLRTRL LITALFGAGL  60
   61 GWAWLAARAE KEQWRQQQRT EALRQAAVGQ GDFSLLDHKG QPRCKADFRG QWVLMYFGFT 120
  121 HCPDICPDEL EKLVQVVRKL EAEPDLPLVQ PVFITVDPER DDVAAMARYV QEFHPRLLGL 180
  181 TGSTEQVAHA SRNYRVYYSA GPKDEDQDYI VDHSIAIYLL NPDGLFTDYY GRSRSAEQIV 240
  241 ESIRRHIAAF HSVLP

Type	Start	End	Confidence
Cytoplasmic	1	47	0.85
Transmembrane Helix	48	67	0.89
Non-Cytoplasmic	68	255	0.92