YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RAGE_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAGTAARAW VLVLALWGAV AGGQNITARI GEPLVLSCKG APKKPPQQLE WKLNTGRTEA  60
   61 WKVLSPQGGP WDSVAQILPN GSLLLPATGI VDEGTFRCRA TNRRGKEVKS NYRVRVYQIP 120
  121 GKPEIVDPAS ELTASVPNKV GTCVSEGSYP AGTLSWHLDG KLLIPDGKET LVKEETRRHP 180
  181 ETGLFTLRSE LTVIPTQGGT THPTFSCSFS LGLPRRRPLN TAPIQLRVRE PGPPEGIQLL 240
  241 VEPEGGIVAP GGTVTLTCAI SAQPPPQVHW IKDGAPLPLA PSPVLLLPEV GHADEGTYSC 300
  301 VATHPSHGPQ ESPPVSIRVT ETGDEGPAEG SVGESGLGTL ALALGILGGL GVVALLVGAI 360
  361 LWRKRQPRRE ERKAPESQED EEERAELNQS EEAEMPENGA GGP

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	339	0.99
Transmembrane Helix	340	362	0.95
Cytoplasmic	363	403	0.99