YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18204717, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKKSSGKR SWPLLGLLVT VATIHLVICP YTKVEESFNL QATHDLLYHQ LDIDKYDHHE  60
   61 FPGVVPRTFL GPLVIAAFSS PVVYVLSLLE VSKFYSQLIV RGVLGLGVIS GLWTLQKEVR 120
  121 QQFGATVAVM FCWISATQFH LMFYCTRTLP NVLALAVVLP ALTAWLQRRW ALFVWLSAFV 180
  181 IIGFRAELAM LLGIALLLTL YQRRLTVARV LRHAIPAGLL CLGKLASLVC LLNKKSWPYK 240
  241 VRAMLVTGHI LVNVAYTATS LYVSHFNYPG GVAMQQLHEL VPPQTDVLLH IDVAAAQTGV 300
  301 SRFLQVNDDW RYDKSEDVGA AAMLNYTHIL MEAVPGHPAL YRDTHRVLAS IEGTTGISLN 360
  361 LMKLPPFDVN LQTKLVLLER LLRPA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	32	0.88
Non-Cytoplasmic	33	67	0.94
Transmembrane Helix	68	88	0.91
Cytoplasmic	89	97	0.77
Transmembrane Helix	98	115	0.93
Non-Cytoplasmic	116	122	0.75
Transmembrane Helix	123	142	0.85
Cytoplasmic	143	148	0.61
Transmembrane Helix	149	167	0.83
Non-Cytoplasmic	168	174	0.53
Transmembrane Helix	175	201	0.82
Cytoplasmic	202	209	0.68
Transmembrane Helix	210	232	0.61
Non-Cytoplasmic	233	244	0.40
Transmembrane Helix	245	266	0.62
Cytoplasmic	267	385	0.54