YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A6_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.71
Transmembrane Helix	16	34	0.74
Non-Cytoplasmic	35	129	0.89
Transmembrane Helix	130	150	0.93
Cytoplasmic	151	158	0.82
Transmembrane Helix	159	177	0.87
Non-Cytoplasmic	178	183	0.75
Transmembrane Helix	184	203	0.93
Cytoplasmic	204	214	0.80
Transmembrane Helix	215	237	0.90
Non-Cytoplasmic	238	242	0.83
Transmembrane Helix	243	263	0.91
Cytoplasmic	264	330	0.97
Transmembrane Helix	331	351	0.93
Non-Cytoplasmic	352	360	0.83
Transmembrane Helix	361	383	0.82
Cytoplasmic	384	392	0.75
Transmembrane Helix	393	410	0.95
Non-Cytoplasmic	411	420	0.59
Transmembrane Helix	421	440	0.81
Cytoplasmic	441	449	0.67
Transmembrane Helix	450	471	0.70
Non-Cytoplasmic	472	477	0.51
Transmembrane Helix	478	498	0.85
Cytoplasmic	499	545	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNDLLKQV GGVGRFQLIQ VTMVVAPLLL MASHNTLQNF TAAIPAHHCR PPANANLSKD  60
   61 GGLEAWLPLD KQGRPESCLR FPFPHNGTEA NGTGVTEPCL DGWVYDNSTF PSTIVTEWNL 120
  121 VCSHRAFRQL AQSLFMVGVL LGAMMFGYLA DRLGRRKVLI LNYLQTAVSG TCAAYAPNYT 180
  181 VYCIFRLLSG MSLASIAINC MTLNMEWMPI HTRAYVGTLI GYVYSLGQFL LAGIAYAVPH 240
  241 WRHLQLAVSV PFFVAFIYSW FFIESARWYS SSGRLDLTLR ALQRVARING KQEEGAKLSI 300
  301 EVLQTSLQKE LTLNKGQASA MELLRCPTLR RLFLCLSMLW FATSFAYYGL VMDLQGFGVS 360
  361 MYLIQVIFGA VDLPAKFVCF LVINSMGRRP AQLASLLLAG ICILVNGIIP RGHTIIRTSL 420
  421 AVLGKGCLAS SFNCIFLYTG ELYPTMIRQT GLGMGSTMAR VGSIVSPLIS MTAEFYPSIP 480
  481 LFIFGAVPVA ASAVTALLPE TLGQPLPDTV QDLKSRSRGK QKQQQLEQQK QMIPLQVSTQ 540
  541 EKNGL