YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18257329, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGHRSTRKR CGDSHPESPV GFGHMSTTGC VLNKLFQLPT PPLSRHQLKR LEEHRYQSAG  60
   61 RSLLEPLMQG YWEWLVGRVP SWIAPNLITI IGLSINICTT ILLVFYCPTA TEQAPLWAYI 120
  121 ACACGLFIYQ SLDAIDGKQA RRTNSSSPLG ELFDHGCDSL STVFVVLGTC IAVQLGTNPD 180
  181 WMFFCCFAGT FMFYCAHWQT YVSGTLRFGI FDVTESQILI ILFQLLSGTV GPWFWNFTIP 240
  241 VLNIQMKLLP ALCTVAGTIF SCTNYFRVIF TGGVGKNGST IAGTSVLSPF LHIGSVITLA 300
  301 VMIYKKSAVQ LFEKHPCLYI LTFGFVSAKI TNKLVVAHMT KSEMHLHDTA FIGPALLFLD 360
  361 QYFNSFIDEY IVLWIALIFS FFDLIRYCVS VCNQIASHLH IHVFRIKAST AHSNHH

Type	Start	End	Confidence
Cytoplasmic	1	81	0.85
Transmembrane Helix	82	107	0.85
Non-Cytoplasmic	108	114	0.70
Transmembrane Helix	115	133	0.89
Cytoplasmic	134	180	0.54
Transmembrane Helix	181	201	0.86
Non-Cytoplasmic	202	217	0.55
Transmembrane Helix	218	237	0.91
Cytoplasmic	238	247	0.51
Transmembrane Helix	248	269	0.88
Non-Cytoplasmic	270	280	0.56
Transmembrane Helix	281	304	0.86
Cytoplasmic	305	316	0.58
Transmembrane Helix	317	337	0.58
Non-Cytoplasmic	338	369	0.55
Transmembrane Helix	370	390	0.79
Cytoplasmic	391	416	0.85