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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17225445, gi|...
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGGSVNITC VAVGSPMPYV KWMLGAEDLT PEDDMPIGRN VLELNDVRQS ANYTCVAMST  60
   61 LGVIEAIAQI TVKALPKPPG TPVVTESTAT SITLTWDSGN PEPVSYYIIQ HKPKNSEEPY 120
  121 KEIDGIATTR YSVAGLSPYS DYEFRVVAVN NIGRGPASEP VLTQTSEQAP SSAPRDVQAR 180
  181 MLSSTTILVQ WKEPEEPNGQ IQGYRVYYTM DPTQHVNNWM KHNVADSQIT TIGNLVPQKT 240
  241 YSVKVLAFTS IGDGPLSSDI QVITQTGVPG QPLNFKAEPE SETSILLSWT PPRSDTIASY 300
  301 ELVYRDGDQG EEQRITIEPG TSYRLQGLKP NSLYYFRLSA RSPQGLGAST AEISARTMQS 360
  361 MFAKNFHVKA VMKTSVLLSW EIPENYNSAM PFKILYDDGK MVEEVDGRAT QKLIVNLKPE 420
  421 KSYSFVLTNR GNSAGGLQHR VTAKTAPDVL RTKPAFIGKT NLDGMITVQL PDVPANENIK 480
  481 GYYIIIVPLK KSRGKFIKPW ESPDEMELDE LLKEISRKRR SIRYGREVEL KPYIAAHFDV 540
  541 LPTEFTLGDD KHYGGFTNKQ LQSGQEYVFF VLAVMDHAES KMYATSPYSD PVVSMDLDPQ 600
  601 PITDEEEGLI WVVGPVLAVV FIICIVIAIL LYKRKRAESE SRKSSLPNSK EVPSHHPTDP 660
  661 VELRRLNFQT PGMASHPPIP ILELADHIER LKANDNLKFS QEYESIDPGQ QFTWEHSNLE 720
  721 VNKPKNRYAN VIAYDHSRVL LSAIEGIPGS DYVNANYIDG YRKQNAYIAT QGSLPETFGD 780
  781 FWRMIWEQRS ATVVMMTKLE ERSRVKCDQY WPSRGTETHG LVQVTLLDTV ELATYCVRTF 840
  841 ALYKNGSSEK REVRQFQFTA WPDHGVPEHP TPFLAFLRRV KTCNPPDAGP MVVHCSAGVG 900
  901 RTGCFIVIDA MLERIKHEKT VDIYGHVTLM RAQRNYMVQT EDQYIFIHDA LLEAVTCGNT 960
  961 EVPARNLYAY IQKLTQIETG ENVTGMELEF KRLASSKAHT SRFISANLPC NKFKNRLVNI1020
 1021 MPYESTRVCL QPIRGVEGSD YINASFLDGY RQQKAYIATQ GPLAETTEDF WRMLWEHNST1080
 1081 IVVMLTKLRE MGREKCHQYW PAERSARYQY FVVDPMAEYN MPQYILREFK VTDARDGQSR1140
 1141 TVRQFQFTDW PEQGVPKSGE GFIDFIGQVH KTKEQFGQDG PISVHCSAGV GRTGVFITLS1200
 1201 IVLERMRYEG VVDIFQTVKM LRTQRPAMVQ TEDQYQFCYR AALEYLGSFD HYAT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle