YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.95
Transmembrane Helix	51	72	0.83
Non-Cytoplasmic	73	81	0.79
Transmembrane Helix	82	104	0.85
Cytoplasmic	105	123	0.74
Transmembrane Helix	124	149	0.83
Non-Cytoplasmic	150	209	0.87
Transmembrane Helix	210	230	0.92
Cytoplasmic	231	238	0.72
Transmembrane Helix	239	261	0.85
Non-Cytoplasmic	262	291	0.79
Transmembrane Helix	292	312	0.90
Cytoplasmic	313	320	0.76
Transmembrane Helix	321	344	0.88
Non-Cytoplasmic	345	376	0.77
Transmembrane Helix	377	401	0.75
Cytoplasmic	402	421	0.91
Transmembrane Helix	422	444	0.91
Non-Cytoplasmic	445	454	0.83
Transmembrane Helix	455	477	0.91
Cytoplasmic	478	495	0.91
Transmembrane Helix	496	517	0.93
Non-Cytoplasmic	518	535	0.90
Transmembrane Helix	536	558	0.92
Cytoplasmic	559	599	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDNSKVAD GQISTEVSEA PVASDKPKTL VVKVQKKAGD LPDRDTWKGR FDFLMSCVGY  60
   61 AIGLGNVWRF PYLCGKNGGG AFLIPYFLTL IFAGVPLFLL ECSLGQYTSI GGLGVWKLAP 120
  121 MFKGVGLAAA VLSFWLNIYY IVIISWAIYY LYNSFTTTLP WKQCDNPWNT DRCFSNYSLV 180
  181 NTTNMTSAVV EFWERNMHQM TDGLDKPGQI RWPLAITLAI AWVLVYFCIW KGVGWTGKVV 240
  241 YFSATYPYIM LIILFFRGVT LPGAKEGILF YITPNFRKLS DSEVWLDAAT QIFFSYGLGL 300
  301 GSLIALGSYN SFHNNVYRDS IIVCCINSCT SMFAGFVIFS IVGFMAHVTK RSIADVAASG 360
  361 PGLAFLAYPE AVTQLPISPL WAILFFSMLL MLGIDSQFCT VEGFITALVD EYPRLLRNRR 420
  421 ELFIAAVCIV SYLIGLSNIT QGGIYVFKLF DYYSASGMSL LFLVFFECVS ISWFYGVNRF 480
  481 YDNIQEMVGS RPCIWWKLCW SFFTPIIVAG VFLFSAVQMT PLTMGSYVFP KWGQGVGWLM 540
  541 ALSSMVLIPG YMAYMFLTLK GSLKQRLQVM IQPSEDIVRP ENGPEQPQAG SSASKEAYI