YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPT2A_MOUSE, NPT...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	105	0.68
Transmembrane Helix	106	128	0.77
Non-Cytoplasmic	129	140	0.52
Transmembrane Helix	141	163	0.76
Cytoplasmic	164	167	0.34
Transmembrane Helix	168	182	0.38
Non-Cytoplasmic	183	183	0.22
Transmembrane Helix	184	204	0.66
Cytoplasmic	205	224	0.59
Transmembrane Helix	225	245	0.69
Non-Cytoplasmic	246	344	0.81
Transmembrane Helix	345	368	0.92
Cytoplasmic	369	387	0.76
Transmembrane Helix	388	408	0.80
Non-Cytoplasmic	409	411	0.49
Transmembrane Helix	412	433	0.78
Cytoplasmic	434	440	0.67
Transmembrane Helix	441	460	0.86
Non-Cytoplasmic	461	468	0.84
Transmembrane Helix	469	490	0.92
Cytoplasmic	491	510	0.91
Transmembrane Helix	511	531	0.94
Non-Cytoplasmic	532	537	0.72
Transmembrane Helix	538	559	0.91
Cytoplasmic	560	637	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSYSERLGG PAVSPLPVRG RHMVHGATFA YVPSPQVLHR IPGTSTYAIS SLSPVTLTEH  60
   61 SCPCGEVLEC HDPLPTKLAQ EEEQKPEPRL SQKLAQVGTK LLKVPLMLAF LYLFVCSLDV 120
  121 LSSAFQLAGG KVAGDIFKDN AILSNPVAGL VVGILVTVLV QSSSTSTSII VSMVSSGLLE 180
  181 VSSAIPIIMG SNIGTSVTNT IVALMQAGDR TDFRRAFAGA TVHDCFNWLS VLVLLPLEAA 240
  241 TGYLHHVTGL VVASFNIRGG RDAPDLLKVI TEPFTRLIIQ LDKSVITSIA VGDESLRNHS 300
  301 LIRIWCHPDT TEASTSMSRV EAIGSLANTT MEKCNHIFVD TGLPALAVGL ILLAGSLVVL 360
  361 CTCLILLVKM LNSLLKGQVA MSSRRSSTQT FPAPFTWVTG YFAMVVGASM TFVVQSSSVF 420
  421 TSAITPLIGL GVISIERAYP LTLGSNIGTT TTAILAAVAS PREKLSSSFQ IALCHFFFNI 480
  481 SGILLWYPLP CTRLPIRMAK ALGKRTAKYR WFAVLYLLVC FLLLPSLVFG ISMAGWQAMV 540
  541 GVGTPFGALL AFVVLVNVLQ SRSPGHLPKW LQTWDFLPRW MHSLQPLDGL ITRATLCYAR 600
  601 PEPRSPQLPP RVFLEELPPA TPSPRLALPA HHNATRL