YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149056668, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGELVTGLG ALRRRKRLLE QEKRVAGWAL VLAGTGIGLM VLHAEMLWFL GCKWVLYLLL  60
   61 VKCLITLSTA FLLCLIVVFH AKEVQLFMTD NGLRDWRVAL TRRQVAQILL ELLVCGVHPV 120
  121 PLRSPHCTLA GEATDSQAWP GFLGEGEALL SLAMLLRLYL VPRAVLLRSG VLLNASYRSI 180
  181 GALNQVRFRH WFVAKLYMNT HPGRLLLGLT LGLWLTTAWV LSVAERQAVN ATGHLTDTLW 240
  241 LIPITFLTIG YGDVVPGTLW GKIVCLCTGV MGVCCTALLV AVVARKLEFN KAEKHVHNFM 300
  301 MDIHYAKEMK ESAARLLQEA WMYYKHTRRK DSRAARRHQR KMLAAIHTFR QVRLKHRKLR 360
  361 EQVNSMVDIS KMHMILCDLQ LGLSASHLAL EKRIDGLAGK LDALTELLST ALQQQPPEPI 420
  421 QEAT

Type	Start	End	Confidence
Cytoplasmic	1	24	0.97
Transmembrane Helix	25	44	0.97
Non-Cytoplasmic	45	57	0.72
Transmembrane Helix	58	79	0.96
Cytoplasmic	80	163	0.60
Transmembrane Helix	164	182	0.55
Non-Cytoplasmic	183	200	0.62
Transmembrane Helix	201	223	0.86
Cytoplasmic	224	232	0.61
Transmembrane Helix	233	252	0.77
Non-Cytoplasmic	253	258	0.71
Transmembrane Helix	259	284	0.87
Cytoplasmic	285	424	0.87