YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118763857, gi...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.52
Transmembrane Helix	5	25	0.50
Non-Cytoplasmic	26	80	0.96
Transmembrane Helix	81	101	0.94
Cytoplasmic	102	109	0.89
Transmembrane Helix	110	132	0.86
Non-Cytoplasmic	133	162	0.85
Transmembrane Helix	163	181	0.95
Cytoplasmic	182	191	0.83
Transmembrane Helix	192	214	0.91
Non-Cytoplasmic	215	247	0.87
Transmembrane Helix	248	270	0.80
Cytoplasmic	271	294	0.88
Transmembrane Helix	295	317	0.87
Non-Cytoplasmic	318	326	0.85
Transmembrane Helix	327	350	0.91
Cytoplasmic	351	370	0.92
Transmembrane Helix	371	390	0.95
Non-Cytoplasmic	391	407	0.91
Transmembrane Helix	408	432	0.88
Cytoplasmic	433	474	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFTIILAWA LFYLISSFSS QLPWASCDNI WNTDNCVNLA AGNLTFNRTT QMLINSTSAA  60
   61 TEFWERRVLS LSGGIEDIGK INWEILLCLI AMWIICYFCI WKGVKSTGKV VYFTATFPYV 120
  121 MLIVLLIRGL TLPGALQGIV FYLYPEPARL ADPQVWMEAG TQIFFSYSVI GGVLISLGSY 180
  181 NQYNNNCYRD CFWLCLLNSG TSFVAGFAVF SVLGFMAHVQ GVPIEEVAES GPGLAFIAYP 240
  241 QAVAMMPFPQ LWAVCFFIMI ILLGLDTQFV SVECVITSVM DLFPEVLRRA GRRELLVLLL 300
  301 CLTCFFGQLI MVTEGGMYVF QLFDNYACNG ACLLFLSVFE SLAIGWIFGA EKMFDIIEDM 360
  361 TESRPNYWFM LCWKYLTPLV SLTSFVYSMV RYTPLTFNRW YIYPDWAYVL GWLLALSSIL 420
  421 LVPAWALGQM CAGKGSLKQR WRHLSSPETN FPLSFKQVQK QTAEMEDLLK SGTI