YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSI2H_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANGSPGTS GSANDSQHDP GKMFIGGLSW QTSPDSLRDY FSKFGEIREC MVMRDPTTKR  60
   61 SRGFGFVTFA DPASVDKVLG QPHHELDSKT IDPKVAFPRR AQPKMVTRTK KIFVGGLSAN 120
  121 TVVEDVKQYF EQFGKVEDAM LMFDKTTNRH RGFGFVTFEN EDVVEKVCEI HFHEINNKMV 180
  181 ECKKAQPKEV MFPPGTRGRA RGLPYTMDAF MLGMGMLGYP NFVATYGRGY PGFAPSYGYQ 240
  241 FPGFPAAAYG PVAAAAVAAA RGSVLNSYSA QPNFGAPASP AGSNPARPGG FPGANSPGPV 300
  301 ADLYGPASQD SGVGNYISAA SPQPGSGFGH GIAGPLIATA FTNGYH

Type	Start	End	Confidence
Cytoplasmic	1	204	0.94
Transmembrane Helix	205	224	0.87
Non-Cytoplasmic	225	243	0.83
Transmembrane Helix	244	265	0.81
Cytoplasmic	266	346	0.85