YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S15A1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	53	0.91
Transmembrane Helix	54	74	0.95
Cytoplasmic	75	82	0.80
Transmembrane Helix	83	103	0.90
Non-Cytoplasmic	104	119	0.89
Transmembrane Helix	120	143	0.88
Cytoplasmic	144	162	0.93
Transmembrane Helix	163	184	0.93
Non-Cytoplasmic	185	199	0.86
Transmembrane Helix	200	223	0.86
Cytoplasmic	224	278	0.98
Transmembrane Helix	279	297	0.81
Non-Cytoplasmic	298	361	0.85
Transmembrane Helix	362	380	0.63
Cytoplasmic	381	620	0.59
Transmembrane Helix	621	643	0.91
Non-Cytoplasmic	644	649	0.71
Transmembrane Helix	650	673	0.89
Cytoplasmic	674	709	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMSKSRGCF GYPLSIFFIV VNEFCERFSY YGMRALLVLY FRNFLGWDDN LSTAIYHTFV  60
   61 ALCYLTPILG ALIADSWLGK FKTIVSLSIV YTIGQAVISV SSINDLTDHD HNGSPDSLPV 120
  121 HVALSMVGLA LIALGTGGIK PCVSAFGGDQ FEEGQEKQRN RFFSIFYLAI NGGSLLSTII 180
  181 TPILRVQQCG IHSQQACYPL AFGVPAALMA VALIVFVLGS GMYKKFQPQG NIMGKVAKCI 240
  241 GFAIKNRFRH RSKAYPKREH WLDWAKEKYD ERLISQIKMV TKVMFLFIPL PMFWGLFDQQ 300
  301 GSRWTLQATT MNGKIGANEI QPDQMQTVNA ILNVNNGPNV DAVVYRSIAK CGFNFTSLKK 360
  361 MTVGMFLASM AFVVAAIVQV EIDKTLPVFP GGNQVQIKVL NIGNNNMTVH FPGNSVTLAQ 420
  421 MSQTDTFMTF DIDKLTSINI SSSGSPGVTT VAHDFEQGHR HNLLVWEPSQ YRVVKDGPNQ 480
  481 KPEKGENGIR FVNTLNEMVT NKMSGKVYEK FTSHNASGYK FLPSGEKQYT INTTAVAPTC 540
  541 LTDFKSSNLD FGSAYTYVIR RASDGCLEVK EFEDIPPNTV NMALQIPQYF LLTCGEVVFS 600
  601 VTGLEFSYSQ APSNMKSVLQ AGWLLTVAVG NIIVLIVAGA GHFPKQWAEY ILFASLLLVV 660
  661 CVIFAIMARF YTYINPAEIE AQFDEDEKKK GIGKENPYSS LEPVSQTNM