YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF7_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPEQYDMG FYQSNYIIDN QEPSCNDSNA YGNVYGYREP QATEQPSSPA PPEMFLPSDY  60
   61 GGQLFQPASN LDYYSQSPSV DTFDEEPPLL EELGINFDHI WQKTLTVLNP MKPADGSIMN 120
  121 ETDLTGPILF CVALGATLLM AGKAQFGYVY GMSAIGCLGI HALLNLMSNS GVSYGCVASV 180
  181 LGYCLLPMVL LSSCAVFFSL QGTIGTMSAL LIITWCSLSA SKIFISALAM EGQQLLVAYP 240
  241 CALLYGLFAL LTVF

Type	Start	End	Confidence
Cytoplasmic	1	121	0.95
Transmembrane Helix	122	141	0.74
Non-Cytoplasmic	142	145	0.62
Transmembrane Helix	146	167	0.83
Cytoplasmic	168	173	0.58
Transmembrane Helix	174	199	0.81
Non-Cytoplasmic	200	203	0.50
Transmembrane Helix	204	225	0.84
Cytoplasmic	226	234	0.63
Transmembrane Helix	235	253	0.91
Non-Cytoplasmic	254	254	0.76