YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S29A1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.93
Transmembrane Helix	13	33	0.93
Non-Cytoplasmic	34	77	0.96
Transmembrane Helix	78	102	0.86
Cytoplasmic	103	109	0.90
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	137	0.79
Transmembrane Helix	138	168	0.73
Cytoplasmic	169	175	0.79
Transmembrane Helix	176	198	0.88
Non-Cytoplasmic	199	204	0.87
Transmembrane Helix	205	226	0.94
Cytoplasmic	227	287	0.97
Transmembrane Helix	288	310	0.90
Non-Cytoplasmic	311	325	0.87
Transmembrane Helix	326	344	0.77
Cytoplasmic	345	359	0.71
Transmembrane Helix	360	380	0.85
Non-Cytoplasmic	381	397	0.71
Transmembrane Helix	398	421	0.89
Cytoplasmic	422	434	0.73
Transmembrane Helix	435	456	0.92
Non-Cytoplasmic	457	460	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSHQPQDR YKAVWLIFFV LGLGTLLPWN FFMTATKYFT NRLDVSQNVS SDTDQSCEST  60
   61 KALADPTVAL PARSSLSAIF NNVMTLCAML PLLVFTCLNS FLHQRISQSV RILGSLLAIL 120
  121 LVFLVTAALV KVEMDALIFF VITMIKIVLI NSFGAILQAS LFGLAGVLPA NYTAPIMSGQ 180
  181 GLAGFFTSVA MICAIASGSE LSESAFGYFI TACAVVILAI LCYLALPRTE FYRHYLQLNL 240
  241 AGPAEQETKL DLISKGEEPK GRREESGVPG PNSPPTNRNQ SIKAILKSIC VPALSVCFIF 300
  301 TVTIGLFPAV TAEVESSIAG TSPWKSYFIP VACFLNFNVF DWLGRSLTAV CMWPGQDSRW 360
  361 LPVLVASRIV FIPLLMLCNV KARHCGAQRH HFVFKHDAWF IAFMAAFAFS NGYLASLCMC 420
  421 FGPKKVKPAE AETAGNIMSF FLCLGLALGA VLSFLLRALV