YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FADS1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPDPVPTPG PASAQLRQTR YFTWEEVAQR SGREKERWLV IDRKVYNISD FSRRHPGGSR  60
   61 VISHYAGQDA TDPFVAFHIN KGLVRKYMNS LLIGELAPEQ PSFEPTKNKA LTDEFRELRA 120
  121 TVERMGLMKA NHLFFLVYLL HILLLDVAAW LTLWIFGTSL VPFILCAVLL STVQAQAGWL 180
  181 QHDFGHLSVF GTSTWNHLLH HFVIGHLKGA PASWWNHMHF QHHAKPNCFR KDPDINMHPL 240
  241 FFALGKVLPV ELGREKKKHM PYNHQHKYFF LIGPPALLPL YFQWYIFYFV VQRKKWVDLA 300
  301 WMLSFYARIF FTYMPLLGLK GFLGLFFIVR FLESNWFVWV TQMNHIPMHI DHDRNVDWVS 360
  361 TQLQATCNVH QSAFNNWFSG HLNFQIEHHL FPTMPRHNYH KVAPLVQSLC AKYGIKYESK 420
  421 PLLTAFADIV YSLKESGQLW LDAYLHQ

Type	Start	End	Confidence
Cytoplasmic	1	127	0.97
Transmembrane Helix	128	145	0.84
Non-Cytoplasmic	146	149	0.44
Transmembrane Helix	150	173	0.79
Cytoplasmic	174	186	0.60
Transmembrane Helix	187	205	0.57
Non-Cytoplasmic	206	267	0.55
Transmembrane Helix	268	289	0.89
Cytoplasmic	290	308	0.47
Transmembrane Helix	309	329	0.92
Non-Cytoplasmic	330	447	0.53