YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|188219544, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.97
Transmembrane Helix	73	95	0.86
Non-Cytoplasmic	96	125	0.91
Transmembrane Helix	126	146	0.87
Cytoplasmic	147	153	0.75
Transmembrane Helix	154	173	0.86
Non-Cytoplasmic	174	180	0.64
Transmembrane Helix	181	202	0.79
Cytoplasmic	203	213	0.89
Transmembrane Helix	214	237	0.87
Non-Cytoplasmic	238	244	0.76
Transmembrane Helix	245	263	0.95
Cytoplasmic	264	305	0.97
Transmembrane Helix	306	331	0.82
Non-Cytoplasmic	332	351	0.84
Transmembrane Helix	352	372	0.88
Cytoplasmic	373	386	0.86
Transmembrane Helix	387	405	0.74
Non-Cytoplasmic	406	410	0.60
Transmembrane Helix	411	433	0.87
Cytoplasmic	434	443	0.62
Transmembrane Helix	444	467	0.89
Non-Cytoplasmic	468	475	0.69
Transmembrane Helix	476	498	0.90
Cytoplasmic	499	582	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVKQRILA PGKEGIKNFA GKSLGQIYRV LEKKQDNRET IELTEDGKPL EVPEKKAPLC  60
   61 DCTCFGLPRR YIIAIMSGLG FCISFGIRCN LGVAIVDMVN NSTIHRGGKV IKEKAKFNWD 120
  121 PETVGMIHGS FFWGYIITQI PGGYIASRLA ANRVFGAAIL LTSTLNMLIP SAARVHYGCV 180
  181 IFVRILQGLV EGVTYPACHG IWSKWAPPLE RSRLATTSFC GSYAGAVIAM PLAGILVQYT 240
  241 GWSSVFYVYG SFGMVWYMFW LLVSYESPAK HPTITDEERR YIEESIGESA NLLGAMEKFK 300
  301 TPWRKFFTSM PVYAIIVANF CRSWTFYLLL ISQPAYFEEV FGFEISKVGM LSAVPHLVMT 360
  361 IIVPIGGQIA DFLRSKQILS TTTVRKIMNC GGFGMEATLL LVVGYSHTRG VAISFLVLAV 420
  421 GFSGFAISGF NVNHLDIAPR YASILMGISN GVGTLSGMVC PIIVGAMTKN KSREEWQYVF 480
  481 LIAALVHYGG VIFYALFASG EKQPWADPEE TSEEKCGFIH EDELDEETGD ITQNYINYGT 540
  541 TKSYGATSQE NGGWPNGWEK KEEFVQEGAQ DAYTYKDRDD YS