YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGW_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.80
Transmembrane Helix	20	42	0.87
Non-Cytoplasmic	43	60	0.75
Transmembrane Helix	61	92	0.77
Cytoplasmic	93	128	0.90
Transmembrane Helix	129	152	0.81
Non-Cytoplasmic	153	160	0.88
Transmembrane Helix	161	182	0.89
Cytoplasmic	183	201	0.89
Transmembrane Helix	202	223	0.90
Non-Cytoplasmic	224	232	0.85
Transmembrane Helix	233	255	0.88
Cytoplasmic	256	260	0.73
Transmembrane Helix	261	280	0.56
Non-Cytoplasmic	281	304	0.60
Transmembrane Helix	305	326	0.68
Cytoplasmic	327	337	0.75
Transmembrane Helix	338	358	0.91
Non-Cytoplasmic	359	370	0.79
Transmembrane Helix	371	396	0.86
Cytoplasmic	397	446	0.82
Transmembrane Helix	447	465	0.80
Non-Cytoplasmic	466	471	0.72
Transmembrane Helix	472	493	0.94
Cytoplasmic	494	503	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKQLKEAF VRNLSGTSVL EVTQGLCFPA FCILCRGLWI IFSQHVCSFS NTWSTRFLMD  60
   61 FVVLIVPLVI TLTVLSSFIL LENLTVIVWG AWLLYQIYHR RTCYAKVPVQ KVFANFLKIS 120
  121 LESEYNPAIT CYRVINSVFT AIAILAVDFP LFPRRFAKTE LYGTGAMDFG VGGFIFGAAM 180
  181 VCPEVRRKSI EESRFNYLRK SLYSVWPLVF LGMGRLVIIK SIGYQEHSTE YGIHWNFFFT 240
  241 IIVVRLVTSL LLIIFPLNKS WIVAVSITVV YQLALDYTPL KRILLYGTDG SGTRVGFLNA 300
  301 NREGIISTLG YVTIHMAGVQ TGLYVLKGRA QVRDWIKATC WVFSVAVGFF ISLHIVQVNI 360
  361 EAVSRRMANL AFCLWVVASS LMLLSCLLLS GIILSFAQFL IKGSLVPCSW KLIQSPTTHK 420
  421 NHSESLILEA EKNQPSLCLI TALNRNQLFF FLLSNITTGL INLTMDTLHT GALWTLVVLS 480
  481 IYMFTNCLVI YVLDLQGKTI KFW