YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALR_MOUSE, CALC...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	146	0.99
Transmembrane Helix	147	173	0.88
Cytoplasmic	174	186	0.81
Transmembrane Helix	187	203	0.95
Non-Cytoplasmic	204	270	0.95
Transmembrane Helix	271	290	0.96
Cytoplasmic	291	297	0.88
Transmembrane Helix	298	317	0.94
Non-Cytoplasmic	318	336	0.82
Transmembrane Helix	337	357	0.94
Cytoplasmic	358	375	0.87
Transmembrane Helix	376	396	0.91
Non-Cytoplasmic	397	415	0.82
Transmembrane Helix	416	432	0.90
Cytoplasmic	433	515	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLLVNRFT LLLLLLVSPT PVLQAPTNLT DSGLDQEPFL YLVGRKKLLD AQYKCYDRIH  60
   61 QLPSYEGEGL YCNRTWDGWM CWDDTPAGAT AYQHCPDYFP DFDTAEKVSK YCDENGEWFR 120
  121 HPDSNRTWSN YTLCNAFTSE KLQNAYVLYY LALVGHSLSI AALVASMLIF WIFKNLSCQR 180
  181 VTLHKHMFLT YILNSIIIII HLVEVVPNGD LVRRDPMHIF HHNTHMWTMQ WELSPPLPLC 240
  241 AHEGKMDPHA SEVISCKVLH FLHQYMMSCN YFWMLCEGIY LHTLIVMAVF TDEQRLRWYY 300
  301 LLGWGFPIVP TIIHAITRAL YYNDNCWLSA ETHLLYIIHG PVMVALVVNF FFLLNIVRVL 360
  361 VTKMRQTHEA ESYMYLKAVK ATMVLVPLLG IQFVVFPWRP SNKVLGKIYD YLMHSLIHFQ 420
  421 GFFVATIYCF CNHEVQVTLK RQWTQFKIQW SQRWGRRRPT NRVVSAPRAV AFAEPDGLPI 480
  481 YICHQEPRNP PISNNEGEES TEMIPMNVIQ QDASA