YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCWGRNRGR LLCMLLLTFM FMVLEVVVSR VTASLAMLSD SFHMLSDVLA LVVALVAERF  60
   61 ARRTHATQKN TFGWIRAEVM GALVNAIFLT GLCFAILLEA VERFIEPHEM QQPLVVLSVG 120
  121 VAGLLVNVLG LCLFHHHSGE GQGAGHGHSH GHGHGHLAKG ARKAGRAGVE AGAPPGRAPD 180
  181 QEETNTLVAN TSNSNGLKAD QAEPEKLRSD DPVDVQVNGN LIQESDNLEA EDNRAGQLNM 240
  241 RGVFLHVLGD ALGSVIVVVN ALVFYFNWKG CTEDDFCTNP CFPDPCKSSV EIINSTQAPM 300
  301 RDAGPCWVLY LDPTLCIIMV CILLYTTYPL LKESALILLQ TVPKQIDIKH LVKELRDVDG 360
  361 VEEVHELHVW QLAGSRIIAT AHIKCEDPAS YMQVAKTIKD VFHNHGIHAT TIQPEFASVG 420
  421 SKSSVLPCEL ACRTQCALKQ CCGTRPQVHS GKDAEKAPTV SISCLELSEN LEKKARRTKA 480
  481 EGSLPAVVIE IKNVPNKQPE SSL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.93
Transmembrane Helix	11	33	0.89
Non-Cytoplasmic	34	40	0.80
Transmembrane Helix	41	61	0.89
Cytoplasmic	62	78	0.86
Transmembrane Helix	79	98	0.93
Non-Cytoplasmic	99	113	0.82
Transmembrane Helix	114	134	0.94
Cytoplasmic	135	242	0.97
Transmembrane Helix	243	266	0.84
Non-Cytoplasmic	267	307	0.90
Transmembrane Helix	308	328	0.90
Cytoplasmic	329	503	0.89