YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXD4_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLNLLGFL IITLNCNVTI MGMIWLIVEV LLRMLVVVLA GSPIYEDEQE RFICNTLQPG  60
   61 CANVCYDLFS PVSPLRFWLV QSLALLLPSV VFGTYTLHRG AKLAAVGGAC RPQVPDLSTA 120
  121 YLVHLLLRML LEAGLAFLHY FLFGFSVPAR VSCSHVPCSG AVDCYVSRPT EKSLLILFFW 180
  181 AVSALSFLLS LADLLWILPR RKTLRTTQWV NGEARPVCEV PAPPPCLLQN PQGYLSQGQV 240
  241 DQEDRQEEQV VPEFPCMWTA GQSDNSNVGQ ACVSGLLEHS DQDASEATSS AGDRLTVAHT 300
  301 AHELRFHRET SLDLGGKNTQ ADELSLATQS HLARHSSASK PQAPCRLTTS GSAPHLRTKK 360
  361 SEWV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	28	0.90
Non-Cytoplasmic	29	76	0.92
Transmembrane Helix	77	98	0.92
Cytoplasmic	99	119	0.90
Transmembrane Helix	120	142	0.81
Non-Cytoplasmic	143	175	0.84
Transmembrane Helix	176	197	0.96
Cytoplasmic	198	364	0.90